표제지
목차
초록 10
I. 서론 12
II. 재료 및 방법 17
1. 엽록체 전체 염기서열 분석 17
1-1. 재료 17
1-2. 방법 17
2. 엽록체 게놈 비교분석 18
2-1. 재료 18
2-2. 방법 18
III. 결과 22
1. 국내 광의의 댕강나무속 4분류군의 엽록체 게놈의 일반적인 특징 22
2. 엽록체 게놈 비교분석 26
2-1. 엽록체 전체 염기서열 일치도 분석 26
2-2. 유전체 구조 비교 28
2-3. Ka/Ks ratio 31
2-4. 계통분석 32
2-5. 계통분석에 유용한 마커지역 탐색 36
IV. 고찰 41
V. 참고문헌 45
Appendix 1. Results of synonymous (Ks) and non-synonymous (Ka) substitution rates for the protein coding genes (PCGs) of the chloroplast genomes of Abelia s.l.. The regions of higher Ka/Ks ratio than 1. 55
Abstract 69
Table 1. Comparison of classification system of the genus Abelia s.l.. 13
Table 2. List of sample used in this study. 19
Table 3. Comparison of chloroplast genome feature of four Korean Zabelia species. 24
Table 4. The functions and gene groups of genes included in the chloroplast genomes in four Korean Zabelia species. 25
Table 5. Molecular markers of cp genomes among the 28 Abelia s.l. species. 36
Table 6. Molecular markers of cp genomes among the 5 Abelia species. 37
Table 7. Molecular markers of cp genomes among the 4 Diabelia species. 38
Table 8. Molecular markers of cp genomes among the 4 Vesalea species. 39
Table 9. Molecular markers of cp genomes among the 15 Zabelia species. 40
Fig. 1. Map of the chloroplast genomes of four Korean Zabelia species. 23
Fig. 2. Visualization of alignment of twenty-eight Abelia s.l. chloroplast genomes using Z. coreana as a reference. The vertical scale indicates the percent identity, ranging from 50% to 100%.... 27
Fig. 3. Comparison of chloroplast genome structure among the Abelia s.l. species. 29
Fig. 4. Comparison of the borders of LSC, SSC and IR regions among the Abelia s.l. species. 30
Fig. 5. ML tree based on whole chloroplast genome sequences. The bootstrap value greater than 50% are below the clades, and the... 33
Fig. 6. ML tree based on 78 protein-coding genes. The bootstrap value greater than 50% are below the clades, and the Bayesian... 35
Fig. 7. The results of sliding window analysis of cp genomes among the 28 Abelia s.l. species. 36
Fig. 8. The results of sliding window analysis of cp genomes among the 5 Abelia species. 37
Fig. 9. The results of sliding window analysis of cp genomes among the 4 Diabelia species. 38
Fig. 10. The results of sliding window analysis of cp genomes among the 4 Vesalea species. 39
Fig. 11. The results of sliding window analysis of cp genomes among the 15 Zabelia species. 40